Pardis Sabeti: search on Z-Library

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1

Benchmarking Metagenomics Tools for Taxonomic Classification

Ye, Simon H., Siddle, Katherine J., Park, Daniel J., Sabeti, Pardis C.

Journal:

Year:

2019

Language:

english

File:

PDF, 3.14 MB

english, 2019

2

An empirical study of the maximal and total information coefficients and leading measures of dependence

Reshef, David N., Reshef, Yakir A., Sabeti, Pardis C., Mitzenmacher, Michael

Journal:

The Annals of Applied Statistics

Year:

2018

Language:

english

File:

PDF, 3.09 MB

english, 2018

3

Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay

Tewhey, Ryan, Kotliar, Dylan, Park, Daniel S., Liu, Brandon, Winnicki, Sarah, Reilly, Steven K., Andersen, Kristian G., Mikkelsen, Tarjei S., Lander, Eric S., Schaffner, Stephen F., Sabeti, Pardis C.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.39 MB

english, 2018

4

Natural selection and infectious disease in human populations

Karlsson, Elinor K., Kwiatkowski, Dominic P., Sabeti, Pardis C.

Journal:

Nature Reviews Genetics

Year:

2014

Language:

english

File:

PDF, 2.60 MB

english, 2014

5

Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay

Tewhey, Ryan, Kotliar, Dylan, Park, Daniel S., Liu, Brandon, Winnicki, Sarah, Reilly, Steven K., Andersen, Kristian G., Mikkelsen, Tarjei S., Lander, Eric S., Schaffner, Stephen F., Sabeti, Pardis C.

Journal:

Year:

2016

Language:

english

File:

PDF, 3.87 MB

english, 2016

6

10.1038/35075590

Reich, David E., Cargill, Michele, Bolk, Stacey, Ireland, James, Sabeti, Pardis C., Richter, Daniel J., Lavery, Thomas, Kouyoumjian, Rose, Farhadian, Shelli F., Ward, Ryk, Lander, Eric S.

Journal:

Year:

2001

Language:

english

File:

PDF, 250 KB

english, 2001

7

Genome-wide detection and characterization of positive selection in human populations

Sabeti, Pardis C., Varilly, Patrick, Fry, Ben, Lohmueller, Jason, Hostetter, Elizabeth, Cotsapas, Chris, Xie, Xiaohui, Byrne, Elizabeth H., McCarroll, Steven A., Gaudet, Rachelle

Journal:

Year:

2007

Language:

english

File:

PDF, 1.23 MB

english, 2007

8

Factors Related to Increasing Prevalence of Resistance to Ciprofloxacin and Other Antimicrobial Drugs in Neisseria gonorrhoeae , United States

Goldstein, Edward, Kirkcaldy, Robert D., Reshef, David, Berman, Stuart, Weinstock, Hillard, Sabeti, Pardis, Del Rio, Carlos, Hall, Geraldine, Hook, Edward W., Lipsitch, Marc

Journal:

Emerging Infectious Diseases

Year:

2012

Language:

english

File:

PDF, 307 KB

english, 2012

9

Roots, Not Parachutes: Research Collaborations Combat Outbreaks

Yozwiak, Nathan L., Happi, Christian T., Grant, Donald S., Schieffelin, John S., Garry, Robert F., Sabeti, Pardis C., Andersen, Kristian G.

Journal:

Year:

2016

Language:

english

File:

PDF, 850 KB

english, 2016

10

Detecting Natural Selection in Genomic Data

Vitti, Joseph J., Grossman, Sharon R., Sabeti, Pardis C.

Journal:

Annual Review of Genetics

Year:

2013

Language:

english

File:

PDF, 517 KB

english, 2013

11

A genetic basis of variation in eccrine sweat gland and hair follicle density

Kamberov, Yana G., Karlsson, Elinor K., Kamberova, Gerda L., Lieberman, Daniel E., Sabeti, Pardis C., Morgan, Bruce A., Tabin, Clifford J.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.11 MB

english, 2015

12

The adaptive variantEDARV370Ais associated with straight hair in East Asians

Tan, Jingze, Yang, Yajun, Tang, Kun, Sabeti, Pardis C., Jin, Li, Wang, Sijia

Journal:

Year:

2013

Language:

english

File:

PDF, 286 KB

english, 2013

13

EDARV370Aassociated facial characteristics in Uyghur population revealing further pleiotropic effects

Peng, Qianqian, Li, Jinxi, Tan, Jingze, Yang, Yajun, Zhang, Manfei, Wu, Sijie, Liu, Yu, Zhang, Juan, Qin, Pengfei, Guan, Yaqun, Jiao, Yi, Zhang, Zhaoxia, Sabeti, Pardis C., Tang, Kun, Xu, Shuhua, Jin,

Journal:

Year:

2016

Language:

english

File:

PDF, 1.17 MB

english, 2016

14

Corrigendum: Human evolutionary genomics: ethical and interpretive issues: [Trends in Genetics 28 (2012)137–145]

Joseph J. Vitti, Mildred K. Cho, Sarah A. Tishkoff, Pardis C. Sabeti

Journal:

Trends in Genetics

Year:

2012

Language:

english

File:

PDF, 62 KB

english, 2012

15

Genomic Analysis of Viral Outbreaks

Wohl, Shirlee, Schaffner, Stephen F., Sabeti, Pardis C.

Journal:

Annual Review of Virology

Year:

2016

Language:

english

File:

PDF, 715 KB

english, 2016

16

Comparative evidence for the independent evolution of hair and sweat gland traits in primates

Kamberov, Yana G., Guhan, Samantha M., DeMarchis, Alessandra, Jiang, Judy, Wright, Sara Sherwood, Morgan, Bruce A., Sabeti, Pardis C., Tabin, Clifford J., Lieberman, Daniel E.

Journal:

Journal of Human Evolution

Year:

2018

Language:

english

File:

PDF, 1009 KB

english, 2018

17

Variants of the CD40 ligand gene are not associated with increased susceptibility to tuberculosis in West Africa

SarahJ. Campbell, Pardis Sabeti, Katherine Fielding, Jackson Sillah, Boubacar Bah, Per Gustafson, Kebba Manneh, Ida Lisse, Giorgio Sirugo, Richard Bellamy, Steve Bennett, Peter Aaby, KeithP.W.J. McAda

Journal:

Year:

2003

Language:

english

File:

PDF, 178 KB

english, 2003

18

Positive Selection on a High-Sensitivity Allele of the Human Bitter-Taste Receptor TAS2R16

Nicole Soranzo, Bernd Bufe, Pardis C. Sabeti, James F. Wilson, Michael E. Weale, Richard Marguerie, Wolfgang Meyerhof, David B. Goldstein

Journal:

Current Biology

Year:

2005

Language:

english

File:

PDF, 283 KB

english, 2005

19

A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC

de Bakker, Paul I W, McVean, Gil, Sabeti, Pardis C, Miretti, Marcos M, Green, Todd, Marchini, Jonathan, Ke, Xiayi, Monsuur, Alienke J, Whittaker, Pamela, Delgado, Marcos

Journal:

Nature Genetics

Year:

2006

Language:

english

File:

PDF, 1.82 MB

english, 2006

20

Human evolutionary genomics: ethical and interpretive issues

Joseph J. Vitti, Mildred K. Cho, Sarah A. Tishkoff, Pardis C. Sabeti

Journal:

Trends in Genetics

Year:

2012

Language:

english

File:

PDF, 660 KB

english, 2012

21

Evaluation of the Potential Impact of Ebola Virus Genomic Drift on the Efficacy of Sequence-Based Candidate Therapeutics

Kugelman, Jeffrey R., Sanchez-Lockhart, Mariano, Andersen, Kristian G., Gire, Stephen, Park, Daniel J., Sealfon, Rachel, Lin, Aaron E., Wohl, Shirlee, Sabeti, Pardis C., Kuhn, Jens H., Palacios, Gusta

Journal:

Year:

2015

Language:

english

File:

PDF, 602 KB

english, 2015

22

GB Virus C Coinfections in West African Ebola Patients

Lauck, Michael, Bailey, Adam L., Andersen, Kristian G., Goldberg, Tony L., Sabeti, Pardis C., O'Connor, David H., Silvestri, G.

Journal:

Journal of Virology

Year:

2015

Language:

english

File:

PDF, 207 KB

english, 2015

23

Identifying the favored mutation in a positive selective sweep

Akbari, Ali, Vitti, Joseph J, Iranmehr, Arya, Bakhtiari, Mehrdad, Sabeti, Pardis C, Mirarab, Siavash, Bafna, Vineet

Journal:

Year:

2018

Language:

english

File:

PDF, 1.63 MB

english, 2018

24

Identifying gene expression programs of cell-type identity and cellular activity with single-cell RNA-Seq

Kotliar, Dylan, Veres, Adrian, Nagy, M Aurel, Tabrizi, Shervin, Hodis, Eran, Melton, Douglas A, Sabeti, Pardis C

Journal:

Year:

2019

Language:

english

File:

PDF, 5.88 MB

english, 2019

25

Ancient and Recent Adaptive Evolution of Primate Non-Homologous End Joining Genes

Demogines, Ann, East, Alysia M., Lee, Ji-Hoon, Grossman, Sharon R., Sabeti, Pardis C., Paull, Tanya T., Sawyer, Sara L., Schierup, Mikkel H.

Journal:

Year:

2010

Language:

english

File:

PDF, 2.02 MB

english, 2010

26

Development of a SNP barcode to genotype Babesia microti infections

Baniecki, Mary Lynn, Moon, Jade, Sani, Kian, Lemieux, Jacob E., Schaffner, Stephen F., Sabeti, Pardis C., Sinnis, Photini

Journal:

PLoS Neglected Tropical Diseases

Year:

2019

File:

PDF, 1.32 MB

2019

27

FRESCo: finding regions of excess synonymous constraint in diverse viruses

Sealfon, Rachel S, Lin, Michael F, Jungreis, Irwin, Wolf, Maxim Y, Kellis, Manolis, Sabeti, Pardis C

Journal:

Year:

2015

Language:

english

File:

PDF, 2.63 MB

english, 2015

28

ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus

Karp, Peter D., Berger, Bonnie, Kovats, Diane, Lengauer, Thomas, Linial, Michal, Sabeti, Pardis, Hide, Winston, Rost, Burkhard

Journal:

Year:

2015

Language:

english

File:

PDF, 288 KB

english, 2015

29

Independent Signals Within the MHC are Associated with Systemic Lupus Erythematosus—A Family-based SNP Study

Michelle Fernando, Christine Stevens, Emily Walsh, Todd Green, Pardis Sabeti, John Rioux, Tim Vyse

Journal:

Clinical Immunology

Year:

2007

Language:

english

File:

PDF, 52 KB

english, 2007

30

Genetic Signatures of Strong Recent Positive Selection at the Lactase Gene

Todd Bersaglieri, Pardis C. Sabeti, Nick Patterson, Trisha Vanderploeg, Steve F. Schaffner, Jared A. Drake, Matthew Rhodes, David E. Reich, Joel N. Hirschhorn

Journal:

The American Journal of Human Genetics

Year:

2004

Language:

english

File:

PDF, 672 KB

english, 2004

31

Positive Selection of a Pre-Expansion CAG Repeat of the Human SCA2 Gene

Yu, Fuli, Sabeti, Pardis C., Hardenbol, Paul, Fu, Qing, Fry, Ben, Lu, Xiuhua, Ghose, Sy, Vega, Richard, Perez, Ag, Pasternak, Shiran, Leal, Suzanne M., Willis, Thomas D., Nelson, David L., Belmont, Jo

Journal:

Year:

2005

Language:

english

File:

PDF, 540 KB

english, 2005

32

Unbiased Deep Sequencing of RNA Viruses from Clinical Samples

Matranga, Christian B., Gladden-Young, Adrianne, Qu, James, Winnicki, Sarah, Nosamiefan, Dolo, Levin, Joshua Z., Sabeti, Pardis C.

Journal:

Journal of Visualized Experiments

Year:

2016

Language:

english

File:

PDF, 317 KB

english, 2016

33

Immunity, infection, migration and human evolution || Genome-wide scans provide evidence for positive selection of genes implicated in Lassa fever

Kristian G. Andersen, Ilya Shylakhter, Shervin Tabrizi, Sharon R. Grossman, Christian T. Happi and Pardis C. Sabeti

Journal:

Philosophical Transactions Biological Sciences

Year:

2012

Language:

english

File:

PDF, 2.26 MB

english, 2012

34

In vivo Ebola virus infection leads to a strong innate response in circulating immune cells

Caballero, Ignacio S., Honko, Anna N., Gire, Stephen K., Winnicki, Sarah M., Melé, Marta, Gerhardinger, Chiara, Lin, Aaron E., Rinn, John L., Sabeti, Pardis C., Hensley, Lisa E., Connor, John H.

Journal:

Year:

2016

Language:

english

File:

PDF, 843 KB

english, 2016

35

Negative Selection by Spiral Inertial Microfluidics Improves Viral Recovery and Sequencing from Blood

Choi, Kyungyong, Ryu, Hyunryul, Siddle, Katherine J, Piantadosi, Anne, Freimark, Lisa, Park, Daniel J, Sabeti, Pardis, Han, Jongyoon

Journal:

Analytical Chemistry

Year:

2018

Language:

english

File:

PDF, 877 KB

english, 2018

36

Deciphering the Ancient and Complex Evolutionary History of Human Arylamine N-Acetyltransferase Genes

Etienne Patin, Luis B. Barreiro, Pardis C. Sabeti, Frédéric Austerlitz, Francesca Luca, Antti Sajantila, Doron M. Behar, Ornella Semino, Anavaj Sakuntabhai, Nicole Guiso, Brigitte Gicquel, Ken McElrea

Journal:

The American Journal of Human Genetics

Year:

2006

Language:

english

File:

PDF, 523 KB

english, 2006

37

Neuropathological Features of Covid-19

Solomon, Isaac H., Normandin, Erica, Bhattacharyya, Shamik, Mukerji, Shibani S., Keller, Kiana, Ali, Ahya S., Adams, Gordon, Hornick, Jason L., Padera, Robert F., Sabeti, Pardis

Journal:

New England Journal of Medicine

Year:

2020

File:

PDF, 297 KB

2020

38

Detecting recent positive selection in the human genome from haplotype structure

Sabeti, Pardis C., Reich, David E., Higgins, John M., Levine, Haninah Z. P., Richter, Daniel J., Schaffner, Stephen F., Gabriel, Stacey B., Platko, Jill V., Patterson, Nick J., McDonald, Gavin J.

Journal:

Year:

2002

Language:

english

File:

PDF, 607 KB

english, 2002

39

Searching for signals of evolutionary selection in 168 genes related to immune function

Emily C. Walsh, Pardis Sabeti, Holli B. Hutcheson, Ben Fry, Stephen F. Schaffner, Paul I. W. de Bakker, Patrick Varilly, Alejandro A. Palma, Jessica Roy, Richard Cooper, Cheryl Winkler, Yi Zeng, Guy d

Journal:

Year:

2006

Language:

english

File:

PDF, 491 KB

english, 2006

40

A Malaria Fingerprint in the Human Genome?

Daily, Johanna P., Sabeti, Pardis

Journal:

Boston Medical and Surgical Journal

Year:

2008

Language:

english

File:

PDF, 85 KB

english, 2008

41

Whole-Genome Sequencing of Babesia microti From Patients Reveals Recent Origin, Extensive Population Structure, and Recent Expansion of Zoonotic Strains

Lemieux, Jacob, Tran, Alice, Freimark, Lisa, Goethert, Heidi, Bazner, Sue, McGrath, Graham, Rosenberg, Eric, Telford, Sam, Bailey, Jeffrey, Sabeti, Pardis

Journal:

Open Forum Infectious Diseases

Year:

2015

Language:

english

File:

PDF, 45 KB

english, 2015

42

Application of genomics to field investigations of malaria by the international centers of excellence for malaria research

Sarah K. Volkman, Daouda Ndiaye, Mahamadou Diakite, Ousmane A. Koita, Davis Nwakanma, Rachel F. Daniels, Daniel J. Park, Daniel E. Neafsey, Marc A.T. Muskavitch, Donald J. Krogstad, Pardis C. Sabeti,

Journal:

Year:

2012

Language:

english

File:

PDF, 460 KB

english, 2012

43

Data sharing: Make outbreak research open access

Yozwiak, Nathan L., Schaffner, Stephen F., Sabeti, Pardis C.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.62 MB

english, 2015

44

Preventing Outbreaks through Interactive, Experiential Real-Life Simulations

Colubri, AndrÃ©s, Kemball, Molly, Sani, Kian, Boehm, Chloe, Mutch-Jones, Karen, Fry, Ben, Brown, Todd, Sabeti, Pardis C.

Journal:

Year:

2020

File:

PDF, 1.36 MB

2020

45

A global transcriptional analysis ofPlasmodium falciparummalaria reveals a novel family of telomere-associated lncRNAs

Kate M Broadbent, Daniel Park, Ashley R Wolf, Daria Van Tyne, Jennifer S Sims, Ulf Ribacke, Sarah Volkman, Manoj Duraisingh, Dyann Wirth, Pardis C Sabeti, John L Rinn

Journal:

Year:

2011

Language:

english

File:

PDF, 1.16 MB

english, 2011

46

ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus

Karp, Peter D., Berger, Bonnie, Kovats, Diane, Lengauer, Thomas, Linial, Michal, Sabeti, Pardis, Hide, Winston, Rost, Burkhard

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 125 KB

english, 2015

47

Identification of Two Independent Risk Factors for Lupus within the MHC in United Kingdom Families

Fernando, Michelle M. A., Stevens, Christine R., Sabeti, Pardis C., Walsh, Emily C., McWhinnie, Alasdair J. M., Shah, Anila, Green, Todd, Rioux, John D., Vyse, Timothy J.

Journal:

Year:

2007

Language:

english

File:

PDF, 842 KB

english, 2007

48

High depth, whole-genome sequencing of cholera isolates from Haiti and the Dominican Republic

Sealfon, Rachel, Gire, Stephen, Ellis, Crystal, Calderwood, Stephen, Qadri, Firdausi, Hensley, Lisa, Kellis, Manolis, Ryan, Edward T, LaRocque, Regina C, Harris, Jason B, Sabeti, Pardis C

Journal:

Year:

2012

Language:

english

File:

PDF, 1.36 MB

english, 2012

49

The Case for Selection at CCR5-Δ32

Sabeti, Pardis C., Walsh, Emily, Schaffner, Steve F., Varilly, Patrick, Fry, Ben, Hutcheson, Holli B., Cullen, Mike, Mikkelsen, Tarjei S., Roy, Jessica, Patterson, Nick, Cooper, Richard, Reich, David,

Journal:

Year:

2005

Language:

english

File:

PDF, 1.02 MB

english, 2005

50

Spread of an Inactive Form of Caspase-12 in Humans Is Due to Recent Positive Selection

Yali Xue, Allan Daly, Bryndis Yngvadottir, Mengning Liu, Graham Coop, Yuseob Kim, Pardis Sabeti, Yuan Chen, Jim Stalker, Elizabeth Huckle, John Burton, Steven Leonard, Jane Rogers, Chris Tyler-Smith

Journal:

The American Journal of Human Genetics

Year:

2006

Language:

english

File:

PDF, 1.23 MB

english, 2006

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